IL_9VTH_182

3D structure

PDB id

9VTH (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

AAG*CCU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9VTH_182 not in the Motif Atlas

Homologous match to IL_9H3G_084

Geometric discrepancy: 0.0855

The information below is about IL_9H3G_084

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_10432.4

Basepair signature

cWW-tWW-cWW

Number of instances in this motif group

12

Unit IDs

9VTH|1|14|A|1901
9VTH|1|14|A|1902
9VTH|1|14|G|1903
*
9VTH|1|14|C|2341
9VTH|1|14|C|2342
9VTH|1|14|U|2343

Current chains

Chain 14

25S rRNA

Nearby chains

Chain LC

60S ribosomal protein L3

Chain LH

60S ribosomal protein L23

Chain La

60S ribosomal protein L24