IL_9VTH_184

3D structure

PDB id

9VTH (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GGAAGUCGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9VTH_184 not in the Motif Atlas

Geometric match to IL_9PN5_075

Geometric discrepancy: 0.0688

The information below is about IL_9PN5_075

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80252.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

12

Unit IDs

9VTH|1|14|G|1904
9VTH|1|14|G|1905
9VTH|1|14|A|1906
9VTH|1|14|A|1907
9VTH|1|14|G|1908
9VTH|1|14|U|1909
9VTH|1|14|C|1910
9VTH|1|14|G|1911
9VTH|1|14|G|1912
*
9VTH|1|14|C|2336
9VTH|1|14|U|2337
9VTH|1|14|G|2338
9VTH|1|14|U|2339
9VTH|1|14|C|2340

Current chains

Chain 14

25S rRNA

Nearby chains

Chain LC

60S ribosomal protein L3

Chain LH

60S ribosomal protein L23