IL_9VTH_185
3D structure
- PDB id
- 9VTH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- AGUCGG*CUGU
- Length
- 10 nucleotides
- Bulged bases
- 9VTH|1|14|G|2338
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9VTH_185 not in the Motif Atlas
- Homologous match to IL_9PN5_076
- Geometric discrepancy: 0.0798
- The information below is about IL_9PN5_076
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_28217.4
- Basepair signature
- cWW-L-R-L-cWW-L-L
- Number of instances in this motif group
- 12
Unit IDs
9VTH|1|14|A|1907
9VTH|1|14|G|1908
9VTH|1|14|U|1909
9VTH|1|14|C|1910
9VTH|1|14|G|1911
9VTH|1|14|G|1912
*
9VTH|1|14|C|2336
9VTH|1|14|U|2337
9VTH|1|14|G|2338
9VTH|1|14|U|2339
Current chains
- Chain 14
- 25S rRNA
Nearby chains
- Chain LC
- 60S ribosomal protein L3
- Chain LH
- 60S ribosomal protein L23
Coloring options: