IL_9VTH_188

3D structure

PDB id

9VTH (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GG*CAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9VTH_188 not in the Motif Atlas

Homologous match to IL_9PN5_079

Geometric discrepancy: 0.1413

The information below is about IL_9PN5_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_18824.4

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

5

Unit IDs

9VTH|1|14|G|1953
9VTH|1|14|G|1954
*
9VTH|1|14|C|2102
9VTH|1|14|A|2103
9VTH|1|14|A|2104
9VTH|1|14|C|2105

Current chains

Chain 14

25S rRNA

Nearby chains

Chain LW

Ribosomal protein L19