IL_9VTH_190

3D structure

PDB id

9VTH (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CGAUGG*UGUUUACG

Length

14 nucleotides

Bulged bases

9VTH|1|14|U|2163, 9VTH|1|14|U|2178, 9VTH|1|14|C|2182

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9VTH_190 not in the Motif Atlas

Homologous match to IL_9PN5_081

Geometric discrepancy: 0.0949

The information below is about IL_9PN5_081

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_14684.4

Basepair signature

cWW-tWW-tWW-tSS-L-cWW

Number of instances in this motif group

6

Unit IDs

9VTH|1|14|C|2160
9VTH|1|14|G|2161
9VTH|1|14|A|2162
9VTH|1|14|U|2163
9VTH|1|14|G|2164
9VTH|1|14|G|2165
*
9VTH|1|14|U|2176
9VTH|1|14|G|2177
9VTH|1|14|U|2178
9VTH|1|14|U|2179
9VTH|1|14|U|2180
9VTH|1|14|A|2181
9VTH|1|14|C|2182
9VTH|1|14|G|2183

Current chains

Chain 14

25S rRNA

Nearby chains

Chain 11

Small subunit ribosomal RNA; SSU rRNA

Chain LB

60S ribosomal protein L8-like

Chain Lq

60S ribosomal protein L37a