IL_9VTH_204

3D structure

PDB id

9VTH (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CU*ACG

Length

5 nucleotides

Bulged bases

9VTH|1|14|C|2507

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9VTH_204 not in the Motif Atlas

Geometric match to IL_9TKV_001

Geometric discrepancy: 0.3159

The information below is about IL_9TKV_001

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

72

Unit IDs

9VTH|1|14|C|2447
9VTH|1|14|U|2448
*
9VTH|1|14|A|2506
9VTH|1|14|C|2507
9VTH|1|14|G|2508

Current chains

Chain 14

25S rRNA

Nearby chains

Chain Lj

60S ribosomal protein L36