IL_9VTH_209

3D structure

PDB id

9VTH (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

9VTH|1|14|A|2629

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9VTH_209 not in the Motif Atlas

Homologous match to IL_9H3G_110

Geometric discrepancy: 0.0804

The information below is about IL_9H3G_110

Detailed Annotation

AG tHS outside loop

Broad Annotation

AG tHS outside loop

Motif group

IL_14190.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

188

Unit IDs

9VTH|1|14|G|2617
9VTH|1|14|G|2618
*
9VTH|1|14|C|2628
9VTH|1|14|A|2629
9VTH|1|14|C|2630

Current chains

Chain 14

25S rRNA

Nearby chains

Chain 16

Transfer RNA; tRNA

Chain LJ

60S ribosomal protein L10

Chain Ld

60S ribosomal protein L29

Chain Lp

60S ribosomal protein L44