IL_9VTH_210

3D structure

PDB id

9VTH (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

AUC*GGU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9VTH_210 not in the Motif Atlas

Homologous match to IL_9H3G_111

Geometric discrepancy: 0.0864

The information below is about IL_9H3G_111

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_84227.2

Basepair signature

cWW-cWS-cWW

Number of instances in this motif group

20

Unit IDs

9VTH|1|14|A|2631
9VTH|1|14|U|2632
9VTH|1|14|C|2633
*
9VTH|1|14|G|2651
9VTH|1|14|G|2652
9VTH|1|14|U|2653

Current chains

Chain 14

25S rRNA

Nearby chains

Chain 16

Transfer RNA; tRNA

Chain LJ

60S ribosomal protein L10

Chain LY

60S ribosomal protein L21-1-like