IL_9VTH_213
3D structure
- PDB id
- 9VTH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- CUGA*UACG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9VTH_213 not in the Motif Atlas
- Homologous match to IL_9H3G_114
- Geometric discrepancy: 0.0826
- The information below is about IL_9H3G_114
- Detailed Annotation
- Tandem non-canonical cWW pairs with external base triple
- Broad Annotation
- Tandem non-canonical cWW pairs with external base triple
- Motif group
- IL_15225.5
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 42
Unit IDs
9VTH|1|14|C|2721
9VTH|1|14|U|2722
9VTH|1|14|G|2723
9VTH|1|14|A|2724
*
9VTH|1|14|U|2738
9VTH|1|14|A|2739
9VTH|1|14|C|2740
9VTH|1|14|G|2741
Current chains
- Chain 14
- 25S rRNA
Nearby chains
- Chain LK
- 60S ribosomal protein L5-like
- Chain LV
- 60S ribosomal protein L18-2
- Chain LY
- 60S ribosomal protein L21-1-like
- Chain Ld
- 60S ribosomal protein L29
- Chain Lp
- 60S ribosomal protein L44
Coloring options: