IL_9VTH_218

3D structure

PDB id

9VTH (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CCAAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9VTH_218 not in the Motif Atlas

Homologous match to IL_8GLP_145

Geometric discrepancy: 0.0714

The information below is about IL_8GLP_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_87767.5

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

20

Unit IDs

9VTH|1|14|C|2838
9VTH|1|14|C|2839
9VTH|1|14|A|2840
9VTH|1|14|A|2841
9VTH|1|14|G|2842
*
9VTH|1|14|C|2852
9VTH|1|14|G|2853
9VTH|1|14|A|2854
9VTH|1|14|C|2855
9VTH|1|14|G|2856

Current chains

Chain 14

25S rRNA

Nearby chains

Chain LJ

60S ribosomal protein L10

Chain Ln

Ubiquitin-60S ribosomal protein L40