IL_9VTH_222

3D structure

PDB id

9VTH (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

UUG*CCAAG

Length

8 nucleotides

Bulged bases

9VTH|1|14|A|2914

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9VTH_222 not in the Motif Atlas

Homologous match to IL_9H3G_124

Geometric discrepancy: 0.1316

The information below is about IL_9H3G_124

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_09353.2

Basepair signature

cWW-cWW-L-cWW

Number of instances in this motif group

3

Unit IDs

9VTH|1|14|U|2894
9VTH|1|14|U|2895
9VTH|1|14|G|2896
*
9VTH|1|14|C|2911
9VTH|1|14|C|2912
9VTH|1|14|A|2913
9VTH|1|14|A|2914
9VTH|1|14|G|2915

Current chains

Chain 14

25S rRNA

Nearby chains

Chain LF

60S ribosomal protein L9-1

Chain LG

60S ribosomal protein L13a-4

Chain Ln

Ubiquitin-60S ribosomal protein L40