IL_9VTH_225
3D structure
- PDB id
- 9VTH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- CAAU*AGAAG
- Length
- 9 nucleotides
- Bulged bases
- 9VTH|1|14|A|3144
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9VTH_225 not in the Motif Atlas
- Homologous match to IL_9H3G_127
- Geometric discrepancy: 0.1057
- The information below is about IL_9H3G_127
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_58355.5
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 50
Unit IDs
9VTH|1|14|C|3006
9VTH|1|14|A|3007
9VTH|1|14|A|3008
9VTH|1|14|U|3009
*
9VTH|1|14|A|3141
9VTH|1|14|G|3142
9VTH|1|14|A|3143
9VTH|1|14|A|3144
9VTH|1|14|G|3145
Current chains
- Chain 14
- 25S rRNA
Nearby chains
- Chain 13
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LC
- 60S ribosomal protein L3
- Chain LG
- 60S ribosomal protein L13a-4
Coloring options: