IL_9VTH_227

3D structure

PDB id

9VTH (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CCUAGUAC*GGAACCG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9VTH_227 not in the Motif Atlas

Homologous match to IL_9H3G_129

Geometric discrepancy: 0.0855

The information below is about IL_9H3G_129

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_34443.2

Basepair signature

cWW-L-R-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

4

Unit IDs

9VTH|1|14|C|3020
9VTH|1|14|C|3021
9VTH|1|14|U|3022
9VTH|1|14|A|3023
9VTH|1|14|G|3024
9VTH|1|14|U|3025
9VTH|1|14|A|3026
9VTH|1|14|C|3027
*
9VTH|1|14|G|3032
9VTH|1|14|G|3033
9VTH|1|14|A|3034
9VTH|1|14|A|3035
9VTH|1|14|C|3036
9VTH|1|14|C|3037
9VTH|1|14|G|3038

Current chains

Chain 14

25S rRNA

Nearby chains

Chain LC

60S ribosomal protein L3

Chain LF

60S ribosomal protein L9-1

Chain LH

60S ribosomal protein L23