IL_9VTH_228

3D structure

PDB id

9VTH (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CAAUU*ACCG

Length

9 nucleotides

Bulged bases

9VTH|1|14|C|3094, 9VTH|1|14|C|3095

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9VTH_228 not in the Motif Atlas

Homologous match to IL_9PN5_113

Geometric discrepancy: 0.0986

The information below is about IL_9PN5_113

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_06671.4

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

12

Unit IDs

9VTH|1|14|C|3049
9VTH|1|14|A|3050
9VTH|1|14|A|3051
9VTH|1|14|U|3052
9VTH|1|14|U|3053
*
9VTH|1|14|A|3093
9VTH|1|14|C|3094
9VTH|1|14|C|3095
9VTH|1|14|G|3096

Current chains

Chain 14

25S rRNA

Nearby chains

Chain LC

60S ribosomal protein L3

Chain LH

60S ribosomal protein L23

Chain La

60S ribosomal protein L24