IL_9VTH_229
3D structure
- PDB id
- 9VTH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- UCAUCG*CGAAG
- Length
- 11 nucleotides
- Bulged bases
- 9VTH|1|14|A|3058, 9VTH|1|14|C|3060
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9VTH_229 not in the Motif Atlas
- Homologous match to IL_9H3G_131
- Geometric discrepancy: 0.0883
- The information below is about IL_9H3G_131
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_43276.1
- Basepair signature
- cWW-L-R-tHW-L-cWW
- Number of instances in this motif group
- 5
Unit IDs
9VTH|1|14|U|3056
9VTH|1|14|C|3057
9VTH|1|14|A|3058
9VTH|1|14|U|3059
9VTH|1|14|C|3060
9VTH|1|14|G|3061
*
9VTH|1|14|C|3086
9VTH|1|14|G|3087
9VTH|1|14|A|3088
9VTH|1|14|A|3089
9VTH|1|14|G|3090
Current chains
- Chain 14
- 25S rRNA
Nearby chains
- Chain LC
- 60S ribosomal protein L3
- Chain La
- 60S ribosomal protein L24
- Chain Lf
- 60S ribosomal protein L31
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