IL_9VTH_231

3D structure

PDB id

9VTH (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

AUUAU*AGAAU

Length

10 nucleotides

Bulged bases

9VTH|1|14|A|3132

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9VTH_231 not in the Motif Atlas

Homologous match to IL_9H3G_133

Geometric discrepancy: 0.0915

The information below is about IL_9H3G_133

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_08938.4

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

27

Unit IDs

9VTH|1|14|A|3105
9VTH|1|14|U|3106
9VTH|1|14|U|3107
9VTH|1|14|A|3108
9VTH|1|14|U|3109
*
9VTH|1|14|A|3129
9VTH|1|14|G|3130
9VTH|1|14|A|3131
9VTH|1|14|A|3132
9VTH|1|14|U|3133

Current chains

Chain 14

25S rRNA

Nearby chains

Chain LF

60S ribosomal protein L9-1

Chain LG

60S ribosomal protein L13a-4

Chain Ln

Ubiquitin-60S ribosomal protein L40