IL_9VTH_233

3D structure

PDB id

9VTH (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GAC*GC

Length

5 nucleotides

Bulged bases

9VTH|1|14|A|3175

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9VTH_233 not in the Motif Atlas

Homologous match to IL_9H3G_135

Geometric discrepancy: 0.1321

The information below is about IL_9H3G_135

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

188

Unit IDs

9VTH|1|14|G|3174
9VTH|1|14|A|3175
9VTH|1|14|C|3176
*
9VTH|1|14|G|3205
9VTH|1|14|C|3206

Current chains

Chain 14

25S rRNA

Nearby chains

Chain LG

60S ribosomal protein L13a-4

Chain LQ

60S ribosomal protein L6-like isoform X1

Chain LT

60S ribosomal protein L14-1

Chain Lh

60S ribosomal protein L35a-3-like