IL_9VTH_234
3D structure
- PDB id
- 9VTH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- CCGCAGUAG*CCAAGG
- Length
- 15 nucleotides
- Bulged bases
- 9VTH|1|14|C|3178, 9VTH|1|14|A|3184
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9VTH_234 not in the Motif Atlas
- Homologous match to IL_9H3G_136
- Geometric discrepancy: 0.1308
- The information below is about IL_9H3G_136
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_28855.2
- Basepair signature
- cWW-L-R-L-cWW-L-cWW-L-L
- Number of instances in this motif group
- 3
Unit IDs
9VTH|1|14|C|3177
9VTH|1|14|C|3178
9VTH|1|14|G|3179
9VTH|1|14|C|3180
9VTH|1|14|A|3181
9VTH|1|14|G|3182
9VTH|1|14|U|3183
9VTH|1|14|A|3184
9VTH|1|14|G|3185
*
9VTH|1|14|C|3199
9VTH|1|14|C|3200
9VTH|1|14|A|3201
9VTH|1|14|A|3202
9VTH|1|14|G|3203
9VTH|1|14|G|3204
Current chains
- Chain 14
- 25S rRNA
Nearby chains
- Chain LF
- 60S ribosomal protein L9-1
- Chain LG
- 60S ribosomal protein L13a-4
- Chain LQ
- 60S ribosomal protein L6-like isoform X1
- Chain LT
- 60S ribosomal protein L14-1
- Chain LX
- 60S ribosomal protein L18a
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