IL_9VTH_242
3D structure
- PDB id
- 9VTH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- AGAG*CGAU
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9VTH_242 not in the Motif Atlas
- Homologous match to IL_8GLP_179
- Geometric discrepancy: 0.0836
- The information below is about IL_8GLP_179
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_58355.5
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 50
Unit IDs
9VTH|1|14|A|3334
9VTH|1|14|G|3335
9VTH|1|14|A|3336
9VTH|1|14|G|3337
*
9VTH|1|14|C|3352
9VTH|1|14|G|3353
9VTH|1|14|A|3354
9VTH|1|14|U|3355
Current chains
- Chain 14
- 25S rRNA
Nearby chains
- Chain LW
- Ribosomal protein L19
- Chain ST
- 40S ribosomal protein S8
Coloring options: