IL_9VVI_020

3D structure

PDB id

9VVI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SecM-arrested 70S ribosome with YheS

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9VVI_020 not in the Motif Atlas

Geometric match to IL_8B0X_019

Geometric discrepancy: 0.0854

The information below is about IL_8B0X_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_62329.1

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

9VVI|1|A|U|409
9VVI|1|A|G|410
9VVI|1|A|A|411
9VVI|1|A|A|412
9VVI|1|A|G|413
9VVI|1|A|A|414
9VVI|1|A|A|415
9VVI|1|A|G|416
*
9VVI|1|A|U|427
9VVI|1|A|G|428
9VVI|1|A|U|429
9VVI|1|A|A|430
9VVI|1|A|A|431
9VVI|1|A|A|432
9VVI|1|A|G|433

Current chains

Chain A

16S rRNA

Nearby chains

Chain D

Small ribosomal subunit protein uS4