IL_9VVI_038
3D structure
- PDB id
- 9VVI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of SecM-arrested 70S ribosome with YheS
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.82 Å
Loop
- Sequence
- GGAGUACG*UAAAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9VVI_038 not in the Motif Atlas
- Homologous match to IL_6CZR_364
- Geometric discrepancy: 0.1226
- The information below is about IL_6CZR_364
- Detailed Annotation
- 8x6 Sarcin-Ricin with inserted Y; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_41756.3
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
9VVI|1|A|G|887
9VVI|1|A|G|888
9VVI|1|A|A|889
9VVI|1|A|G|890
9VVI|1|A|U|891
9VVI|1|A|A|892
9VVI|1|A|C|893
9VVI|1|A|G|894
*
9VVI|1|A|U|905
9VVI|1|A|A|906
9VVI|1|A|A|907
9VVI|1|A|A|908
9VVI|1|A|A|909
9VVI|1|A|C|910
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain L
- Small ribosomal subunit protein uS12
Coloring options: