IL_9VVI_058

3D structure

PDB id

9VVI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SecM-arrested 70S ribosome with YheS

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

G(4OC)CC*G(UR3)AAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 4OC, UR3

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9VVI_058 not in the Motif Atlas

Homologous match to IL_6CZR_368

Geometric discrepancy: 0.1458

The information below is about IL_6CZR_368

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.3

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

9VVI|1|A|G|1401
9VVI|1|A|4OC|1402
9VVI|1|A|C|1403
9VVI|1|A|C|1404
*
9VVI|1|A|G|1497
9VVI|1|A|UR3|1498
9VVI|1|A|A|1499
9VVI|1|A|A|1500
9VVI|1|A|C|1501

Current chains

Chain A

16S rRNA

Nearby chains

Chain X

SecM mRNA

Chain Z

Transfer RNA; tRNA

Chain a

Large subunit ribosomal RNA; LSU rRNA