IL_9VVI_075

3D structure

PDB id

9VVI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SecM-arrested 70S ribosome with YheS

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

UAG*CAAAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9VVI_075 not in the Motif Atlas

Geometric match to IL_8B0X_074

Geometric discrepancy: 0.0622

The information below is about IL_8B0X_074

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_76658.1

Basepair signature

cWW-L-R-cSH-cWW

Number of instances in this motif group

4

Unit IDs

9VVI|1|a|U|293
9VVI|1|a|A|294
9VVI|1|a|G|295
*
9VVI|1|a|C|343
9VVI|1|a|A|344
9VVI|1|a|A|345
9VVI|1|a|A|346
9VVI|1|a|A|347

Current chains

Chain a

23S rRNA

Nearby chains

Chain t

50S ribosomal protein L24