IL_9VVI_101

3D structure

PDB id

9VVI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SecM-arrested 70S ribosome with YheS

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

9VVI|1|a|A|1143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9VVI_101 not in the Motif Atlas

Homologous match to IL_7A0S_036

Geometric discrepancy: 0.3

The information below is about IL_7A0S_036

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.6

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

6

Unit IDs

9VVI|1|a|U|1018
9VVI|1|a|U|1019
9VVI|1|a|A|1020
9VVI|1|a|A|1021
9VVI|1|a|G|1022
9VVI|1|a|U|1023
9VVI|1|a|G|1024
*
9VVI|1|a|C|1140
9VVI|1|a|U|1141
9VVI|1|a|A|1142
9VVI|1|a|A|1143
9VVI|1|a|A|1144

Current chains

Chain a

23S rRNA

Nearby chains

Chain 3

50S ribosomal protein L36

Chain i

50S ribosomal protein L13