IL_9VVI_107

3D structure

PDB id

9VVI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SecM-arrested 70S ribosome with YheS

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

CUGCGAAG*UGGAG

Length

13 nucleotides

Bulged bases

9VVI|1|a|C|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9VVI_107 not in the Motif Atlas

Homologous match to IL_7A0S_043

Geometric discrepancy: 0.1818

The information below is about IL_7A0S_043

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90775.3

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

30

Unit IDs

9VVI|1|a|C|1208
9VVI|1|a|U|1209
9VVI|1|a|G|1210
9VVI|1|a|C|1211
9VVI|1|a|G|1212
9VVI|1|a|A|1213
9VVI|1|a|A|1214
9VVI|1|a|G|1215
*
9VVI|1|a|U|1234
9VVI|1|a|G|1235
9VVI|1|a|G|1236
9VVI|1|a|A|1237
9VVI|1|a|G|1238

Current chains

Chain a

23S rRNA

Nearby chains

Chain p

Large ribosomal subunit protein bL20