IL_9VVI_129

3D structure

PDB id

9VVI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SecM-arrested 70S ribosome with YheS

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

UAUGUAG*UGAAA

Length

12 nucleotides

Bulged bases

9VVI|1|a|U|1714

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9VVI_129 not in the Motif Atlas

Geometric match to IL_8B0X_128

Geometric discrepancy: 0.061

The information below is about IL_8B0X_128

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_82100.1

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

9VVI|1|a|U|1712
9VVI|1|a|A|1713
9VVI|1|a|U|1714
9VVI|1|a|G|1715
9VVI|1|a|U|1716
9VVI|1|a|A|1717
9VVI|1|a|G|1718
*
9VVI|1|a|U|1742
9VVI|1|a|G|1743
9VVI|1|a|A|1744
9VVI|1|a|A|1745
9VVI|1|a|A|1746

Current chains

Chain a

23S rRNA

Nearby chains