IL_9VVI_132
3D structure
- PDB id
- 9VVI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of SecM-arrested 70S ribosome with YheS
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.82 Å
Loop
- Sequence
- UGCAAAC*GGACGUAUA
- Length
- 16 nucleotides
- Bulged bases
- 9VVI|1|a|A|1801, 9VVI|1|a|C|1816, 9VVI|1|a|U|1820
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9VVI_132 not in the Motif Atlas
- Homologous match to IL_7A0S_065
- Geometric discrepancy: 0.0885
- The information below is about IL_7A0S_065
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_17069.6
- Basepair signature
- cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW
- Number of instances in this motif group
- 5
Unit IDs
9VVI|1|a|U|1798
9VVI|1|a|G|1799
9VVI|1|a|C|1800
9VVI|1|a|A|1801
9VVI|1|a|A|1802
9VVI|1|a|A|1803
9VVI|1|a|C|1804
*
9VVI|1|a|G|1813
9VVI|1|a|G|1814
9VVI|1|a|A|1815
9VVI|1|a|C|1816
9VVI|1|a|G|1817
9VVI|1|a|U|1818
9VVI|1|a|A|1819
9VVI|1|a|U|1820
9VVI|1|a|A|1821
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain c
- Large ribosomal subunit protein uL2
Coloring options: