IL_9VVI_147

3D structure

PDB id

9VVI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SecM-arrested 70S ribosome with YheS

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

AUG*CUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9VVI_147 not in the Motif Atlas

Homologous match to IL_3U4M_001

Geometric discrepancy: 0.1421

The information below is about IL_3U4M_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_71625.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

85

Unit IDs

9VVI|1|a|A|2108
9VVI|1|a|U|2109
9VVI|1|a|G|2110
*
9VVI|1|a|C|2179
9VVI|1|a|U|2180
9VVI|1|a|U|2181

Current chains

Chain a

23S rRNA

Nearby chains

Chain 7

Large ribosomal subunit protein uL1

Chain W

Probable ATP-binding protein YheS