IL_9VVI_161
3D structure
- PDB id
- 9VVI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of SecM-arrested 70S ribosome with YheS
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.82 Å
Loop
- Sequence
- CCAAG*CGACG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9VVI_161 not in the Motif Atlas
- Homologous match to IL_7A0S_087
- Geometric discrepancy: 0.1427
- The information below is about IL_7A0S_087
- Detailed Annotation
- Double sheared with non-canonical cWW
- Broad Annotation
- Double sheared
- Motif group
- IL_87767.4
- Basepair signature
- cWW-L-R-tSH-tHS-cWW
- Number of instances in this motif group
- 19
Unit IDs
9VVI|1|a|C|2466
9VVI|1|a|C|2467
9VVI|1|a|A|2468
9VVI|1|a|A|2469
9VVI|1|a|G|2470
*
9VVI|1|a|C|2480
9VVI|1|a|G|2481
9VVI|1|a|A|2482
9VVI|1|a|C|2483
9VVI|1|a|G|2484
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 3
- 50S ribosomal protein L36
- Chain Y
- Transfer RNA; tRNA
- Chain l
- 50S ribosomal protein L16
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