IL_9VVI_166

3D structure

PDB id

9VVI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SecM-arrested 70S ribosome with YheS

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9VVI_166 not in the Motif Atlas

Geometric match to IL_9I0V_003

Geometric discrepancy: 0.3537

The information below is about IL_9I0V_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_16407.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

3

Unit IDs

9VVI|1|a|C|2591
9VVI|1|a|G|2592
*
9VVI|1|a|C|2601
9VVI|1|a|A|2602
9VVI|1|a|G|2603

Current chains

Chain a

23S rRNA

Nearby chains

Chain W

Probable ATP-binding protein YheS

Chain Z

Transfer RNA; tRNA

Chain c

Large ribosomal subunit protein uL2