IL_9VXM_004
3D structure
- PDB id
- 9VXM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human mitoribosome in a non-rotated state, with multiple neomycin molecules bound, featuring A/A-site and P/P-site tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CCU*AUG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9VXM_004 not in the Motif Atlas
- Homologous match to IL_7A0S_011
- Geometric discrepancy: 0.1065
- The information below is about IL_7A0S_011
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_01334.1
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 23
Unit IDs
9VXM|1|A|C|1845
9VXM|1|A|C|1846
9VXM|1|A|U|1847
*
9VXM|1|A|A|1856
9VXM|1|A|U|1857
9VXM|1|A|G|1858
Current chains
- Chain A
- 16S mitochondrial rRNA
Nearby chains
- Chain 0
- Large ribosomal subunit protein bL32m
- Chain F
- Large ribosomal subunit protein uL4m
- Chain M
- Large ribosomal subunit protein uL15m
- Chain R
- Large ribosomal subunit protein bL20m
- Chain S
- Large ribosomal subunit protein bL21m
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