IL_9VXM_035

3D structure

PDB id

9VXM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitoribosome in a non-rotated state, with multiple neomycin molecules bound, featuring A/A-site and P/P-site tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GC*GUAU

Length

6 nucleotides

Bulged bases

9VXM|1|A|U|2628, 9VXM|1|A|A|2629

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9VXM_035 not in the Motif Atlas

Geometric match to IL_8ZAU_001

Geometric discrepancy: 0.1339

The information below is about IL_8ZAU_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_09092.1

Basepair signature

cWW-cWW

Number of instances in this motif group

14

Unit IDs

9VXM|1|A|G|2596
9VXM|1|A|C|2597
*
9VXM|1|A|G|2627
9VXM|1|A|U|2628
9VXM|1|A|A|2629
9VXM|1|A|U|2630

Current chains

Chain A

16S mitochondrial rRNA

Nearby chains

Chain A3

Small ribosomal subunit protein mS38

Chain Ax

Transfer RNA; tRNA