IL_9VXM_068
3D structure
- PDB id
- 9VXM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human mitoribosome in a non-rotated state, with multiple neomycin molecules bound, featuring A/A-site and P/P-site tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CAUCAA*UCAAAACG
- Length
- 14 nucleotides
- Bulged bases
- 9VXM|1|AA|U|758, 9VXM|1|AA|A|782
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9VXM_068 not in the Motif Atlas
- Geometric match to IL_4LFB_011
- Geometric discrepancy: 0.1284
- The information below is about IL_4LFB_011
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_46174.6
- Basepair signature
- cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
- Number of instances in this motif group
- 7
Unit IDs
9VXM|1|AA|C|756
9VXM|1|AA|A|757
9VXM|1|AA|U|758
9VXM|1|AA|C|759
9VXM|1|AA|A|760
9VXM|1|AA|A|761
*
9VXM|1|AA|U|779
9VXM|1|AA|C|780
9VXM|1|AA|A|781
9VXM|1|AA|A|782
9VXM|1|AA|A|783
9VXM|1|AA|A|784
9VXM|1|AA|C|785
9VXM|1|AA|G|786
Current chains
- Chain AA
- 12S mitochondrial rRNA
Nearby chains
- Chain A0
- Small ribosomal subunit protein mS34
- Chain A3
- Small ribosomal subunit protein mS38
- Chain AJ
- Small ribosomal subunit protein uS12m
- Chain AL
- Small ribosomal subunit protein uS15m
- Chain AN
- Small ribosomal subunit protein uS17m
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