IL_9VXM_076
3D structure
- PDB id
- 9VXM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human mitoribosome in a non-rotated state, with multiple neomycin molecules bound, featuring A/A-site and P/P-site tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GUGCCAG*CGGUCACAC
- Length
- 16 nucleotides
- Bulged bases
- 9VXM|1|AA|C|904, 9VXM|1|AA|C|906, 9VXM|1|AA|A|907
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9VXM_076 not in the Motif Atlas
- Homologous match to IL_6CZR_133
- Geometric discrepancy: 0.2581
- The information below is about IL_6CZR_133
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.3
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
9VXM|1|AA|G|887
9VXM|1|AA|U|888
9VXM|1|AA|G|889
9VXM|1|AA|C|890
9VXM|1|AA|C|891
9VXM|1|AA|A|892
9VXM|1|AA|G|893
*
9VXM|1|AA|C|900
9VXM|1|AA|G|901
9VXM|1|AA|G|902
9VXM|1|AA|U|903
9VXM|1|AA|C|904
9VXM|1|AA|A|905
9VXM|1|AA|C|906
9VXM|1|AA|A|907
9VXM|1|AA|C|908
Current chains
- Chain AA
- 12S mitochondrial rRNA
Nearby chains
- Chain AD
- Small ribosomal subunit protein uS5m
- Chain AJ
- Small ribosomal subunit protein uS12m
- Chain AZ
- Small ribosomal subunit protein mS33
- Chain Aw
- A/A-tRNA
- Chain Az
- mRNA
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