IL_9VXM_102
3D structure
- PDB id
- 9VXM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human mitoribosome in a non-rotated state, with multiple neomycin molecules bound, featuring A/A-site and P/P-site tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- G(B8T)C(5MC)*GUAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: B8T, 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9VXM_102 not in the Motif Atlas
- Homologous match to IL_6CZR_368
- Geometric discrepancy: 0.1421
- The information below is about IL_6CZR_368
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_65718.3
- Basepair signature
- cWW-cSH-cWS-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
9VXM|1|AA|G|1485
9VXM|1|AA|B8T|1486
9VXM|1|AA|C|1487
9VXM|1|AA|5MC|1488
*
9VXM|1|AA|G|1562
9VXM|1|AA|U|1563
9VXM|1|AA|A|1564
9VXM|1|AA|A|1565
9VXM|1|AA|C|1566
Current chains
- Chain AA
- 12S mitochondrial rRNA
Nearby chains
- Chain 8
- Large ribosomal subunit protein mL40
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain A3
- Small ribosomal subunit protein mS38
- Chain AJ
- Small ribosomal subunit protein uS12m
- Chain Ax
- Transfer RNA; tRNA
- Chain Az
- mRNA
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