IL_9VXN_023

3D structure

PDB id

9VXN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human cytosolic ribosome in a rotated state, with multiple neomycin molecules bound, featuring A/P-site and P/E-site tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.51 Å

Loop

Sequence

GGUC*GC

Length

6 nucleotides

Bulged bases

9VXN|1|L5|G|483

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9VXN_023 not in the Motif Atlas

Geometric match to IL_5T83_004

Geometric discrepancy: 0.3343

The information below is about IL_5T83_004

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_77710.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

27

Unit IDs

9VXN|1|L5|G|482
9VXN|1|L5|G|483
9VXN|1|L5|U|484
9VXN|1|L5|C|485
*
9VXN|1|L5|G|671
9VXN|1|L5|C|672

Current chains

Chain L5

28S rRNA

Nearby chains