IL_9VXN_132

3D structure

PDB id

9VXN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human cytosolic ribosome in a rotated state, with multiple neomycin molecules bound, featuring A/P-site and P/E-site tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.51 Å

Loop

Sequence

(OMC)(PSU)C*G(PSU)G(A2M)G

Length

8 nucleotides

Bulged bases

9VXN|1|L5|G|4522, 9VXN|1|L5|A2M|4523

QA status

Modified nucleotides: OMC, PSU, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9VXN_132 not in the Motif Atlas

Homologous match to IL_9PN5_103

Geometric discrepancy: 0.0578

The information below is about IL_9PN5_103

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_30722.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

9VXN|1|L5|OMC|4456
9VXN|1|L5|PSU|4457
9VXN|1|L5|C|4458
*
9VXN|1|L5|G|4520
9VXN|1|L5|PSU|4521
9VXN|1|L5|G|4522
9VXN|1|L5|A2M|4523
9VXN|1|L5|G|4524

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL3

Chain LV

Large ribosomal subunit protein uL14