IL_9VXN_190

3D structure

PDB id

9VXN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human cytosolic ribosome in a rotated state, with multiple neomycin molecules bound, featuring A/P-site and P/E-site tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.51 Å

Loop

Sequence

(PSU)UUCGA*UG

Length

8 nucleotides

Bulged bases

9VXN|1|S2|U|368, 9VXN|1|S2|C|369

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9VXN_190 not in the Motif Atlas

Homologous match to IL_9PN5_160

Geometric discrepancy: 0.2478

The information below is about IL_9PN5_160

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_01372.4

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

5

Unit IDs

9VXN|1|S2|PSU|366
9VXN|1|S2|U|367
9VXN|1|S2|U|368
9VXN|1|S2|C|369
9VXN|1|S2|G|370
9VXN|1|S2|A|371
*
9VXN|1|S2|U|393
9VXN|1|S2|G|394

Current chains

Chain S2

18S rRNA

Nearby chains

Chain L5

Large subunit ribosomal RNA; LSU rRNA

Chain SI

Small ribosomal subunit protein eS8

Chain SL

Small ribosomal subunit protein uS17