IL_9VXN_199

3D structure

PDB id

9VXN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human cytosolic ribosome in a rotated state, with multiple neomycin molecules bound, featuring A/P-site and P/E-site tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.51 Å

Loop

Sequence

UCCA*UUAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9VXN_199 not in the Motif Atlas

Geometric match to IL_8GLP_220

Geometric discrepancy: 0.1789

The information below is about IL_8GLP_220

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.5

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

43

Unit IDs

9VXN|1|S2|U|566
9VXN|1|S2|C|567
9VXN|1|S2|C|568
9VXN|1|S2|A|569
*
9VXN|1|S2|U|581
9VXN|1|S2|U|582
9VXN|1|S2|A|583
9VXN|1|S2|A|584

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SJ

Small ribosomal subunit protein uS4

Chain SY

Small ribosomal subunit protein eS24