IL_9VXN_240

3D structure

PDB id

9VXN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human cytosolic ribosome in a rotated state, with multiple neomycin molecules bound, featuring A/P-site and P/E-site tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.51 Å

Loop

Sequence

CUG*CG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9VXN_240 not in the Motif Atlas

Homologous match to IL_9H3G_224

Geometric discrepancy: 0.0787

The information below is about IL_9H3G_224

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_37129.1

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

57

Unit IDs

9VXN|1|S2|C|1363
9VXN|1|S2|U|1364
9VXN|1|S2|G|1365
*
9VXN|1|S2|C|1374
9VXN|1|S2|G|1375

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SR

Small ribosomal subunit protein eS17

Chain Sa

Small ribosomal subunit protein eS26