IL_9W0N_018

3D structure

PDB id

9W0N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class B (TTC-B) that ribosome walking for 4 codons to a 9 codon mRNA spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9W0N_018 not in the Motif Atlas

Homologous match to IL_8B0X_083

Geometric discrepancy: 0.1395

The information below is about IL_8B0X_083

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_15190.4

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

26

Unit IDs

9W0N|1|1|U|703
9W0N|1|1|G|704
9W0N|1|1|A|705
9W0N|1|1|A|706
9W0N|1|1|G|707
*
9W0N|1|1|U|724
9W0N|1|1|G|725
9W0N|1|1|G|726
9W0N|1|1|A|727
9W0N|1|1|G|728

Current chains

Chain 1

23S rRNA

Nearby chains

Chain b

Large ribosomal subunit protein uL2