IL_9W0N_047

3D structure

PDB id

9W0N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class B (TTC-B) that ribosome walking for 4 codons to a 9 codon mRNA spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGAGG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9W0N_047 not in the Motif Atlas

Homologous match to IL_8B0X_112

Geometric discrepancy: 0.1429

The information below is about IL_8B0X_112

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05821.3

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

19

Unit IDs

9W0N|1|1|C|1357
9W0N|1|1|G|1358
9W0N|1|1|A|1359
9W0N|1|1|G|1360
9W0N|1|1|G|1361
*
9W0N|1|1|C|1370
9W0N|1|1|G|1371
9W0N|1|1|U|1372
9W0N|1|1|A|1373
9W0N|1|1|G|1374

Current chains

Chain 1

23S rRNA

Nearby chains

Chain D

Large ribosomal subunit protein bL34

Chain b

Large ribosomal subunit protein uL2

Chain x

Large ribosomal subunit protein bL28