IL_9W0N_094

3D structure

PDB id

9W0N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class B (TTC-B) that ribosome walking for 4 codons to a 9 codon mRNA spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UCACU*AAA

Length

8 nucleotides

Bulged bases

9W0N|1|1|A|2726

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9W0N_094 not in the Motif Atlas

Homologous match to IL_8B0X_162

Geometric discrepancy: 0.146

The information below is about IL_8B0X_162

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_63596.14

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

22

Unit IDs

9W0N|1|1|U|2680
9W0N|1|1|C|2681
9W0N|1|1|A|2682
9W0N|1|1|C|2683
9W0N|1|1|U|2684
*
9W0N|1|1|A|2725
9W0N|1|1|A|2726
9W0N|1|1|A|2727

Current chains

Chain 1

23S rRNA

Nearby chains

Chain c

Large ribosomal subunit protein uL3

Chain k

Large ribosomal subunit protein uL14

Chain n

Large ribosomal subunit protein bL17

Chain p

Large ribosomal subunit protein bL19