IL_9W0N_105
3D structure
- PDB id
- 9W0N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation coupled complex class B (TTC-B) that ribosome walking for 4 codons to a 9 codon mRNA spacer, and fMet-tRNAs in E-site and P-site of the ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- ACCCC*GAACU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9W0N_105 not in the Motif Atlas
- Homologous match to IL_8B0X_174
- Geometric discrepancy: 0.1549
- The information below is about IL_8B0X_174
- Detailed Annotation
- Symmetric double minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_58103.14
- Basepair signature
- cWW-cSH-cWS-L-tSW-R-R-cWW
- Number of instances in this motif group
- 13
Unit IDs
9W0N|1|2|A|34
9W0N|1|2|C|35
9W0N|1|2|C|36
9W0N|1|2|C|37
9W0N|1|2|C|38
*
9W0N|1|2|G|44
9W0N|1|2|A|45
9W0N|1|2|A|46
9W0N|1|2|C|47
9W0N|1|2|U|48
Current chains
- Chain 2
- 5S rRNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain A
- Large ribosomal subunit protein bL31
- Chain e
- Large ribosomal subunit protein uL5
- Chain o
- Large ribosomal subunit protein uL18
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