IL_9W0N_117

3D structure

PDB id

9W0N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class B (TTC-B) that ribosome walking for 4 codons to a 9 codon mRNA spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGG*CGC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9W0N_117 not in the Motif Atlas

Homologous match to IL_8B0X_011

Geometric discrepancy: 0.2329

The information below is about IL_8B0X_011

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.4

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

62

Unit IDs

9W0N|1|3|G|144
9W0N|1|3|G|145
9W0N|1|3|G|146
*
9W0N|1|3|C|176
9W0N|1|3|G|177
9W0N|1|3|C|178

Current chains

Chain 3

16S rRNA

Nearby chains

Chain Y

Small ribosomal subunit protein bS20