IL_9W0N_120
3D structure
- PDB id
- 9W0N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation coupled complex class B (TTC-B) that ribosome walking for 4 codons to a 9 codon mRNA spacer, and fMet-tRNAs in E-site and P-site of the ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GAUUAG*CGACGAUC
- Length
- 14 nucleotides
- Bulged bases
- 9W0N|1|3|U|244, 9W0N|1|3|C|280
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9W0N_120 not in the Motif Atlas
- Homologous match to IL_8B0X_013
- Geometric discrepancy: 0.1347
- The information below is about IL_8B0X_013
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_46174.6
- Basepair signature
- cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
- Number of instances in this motif group
- 7
Unit IDs
9W0N|1|3|G|242
9W0N|1|3|A|243
9W0N|1|3|U|244
9W0N|1|3|U|245
9W0N|1|3|A|246
9W0N|1|3|G|247
*
9W0N|1|3|C|277
9W0N|1|3|G|278
9W0N|1|3|A|279
9W0N|1|3|C|280
9W0N|1|3|G|281
9W0N|1|3|A|282
9W0N|1|3|U|283
9W0N|1|3|C|284
Current chains
- Chain 3
- 16S rRNA
Nearby chains
- Chain Q
- Small ribosomal subunit protein uS12
- Chain V
- Small ribosomal subunit protein uS17
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