IL_9W0N_144
3D structure
- PDB id
- 9W0N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation coupled complex class B (TTC-B) that ribosome walking for 4 codons to a 9 codon mRNA spacer, and fMet-tRNAs in E-site and P-site of the ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GGAGUACG*UAAAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9W0N_144 not in the Motif Atlas
- Homologous match to IL_8B0X_037
- Geometric discrepancy: 0.0644
- The information below is about IL_8B0X_037
- Detailed Annotation
- 8x6 Sarcin-Ricin with inserted Y; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_84044.3
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW-L
- Number of instances in this motif group
- 6
Unit IDs
9W0N|1|3|G|887
9W0N|1|3|G|888
9W0N|1|3|A|889
9W0N|1|3|G|890
9W0N|1|3|U|891
9W0N|1|3|A|892
9W0N|1|3|C|893
9W0N|1|3|G|894
*
9W0N|1|3|U|905
9W0N|1|3|A|906
9W0N|1|3|A|907
9W0N|1|3|A|908
9W0N|1|3|A|909
9W0N|1|3|C|910
Current chains
- Chain 3
- 16S rRNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain Q
- Small ribosomal subunit protein uS12
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