IL_9WNQ_024

3D structure

PDB id

9WNQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

UUU*AAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9WNQ_024 not in the Motif Atlas

Geometric match to IL_4WF9_045

Geometric discrepancy: 0.1441

The information below is about IL_4WF9_045

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.2

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

58

Unit IDs

9WNQ|1|A|U|589
9WNQ|1|A|U|590
9WNQ|1|A|U|591
*
9WNQ|1|A|A|648
9WNQ|1|A|A|649
9WNQ|1|A|G|650

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain H

30S ribosomal protein S8

Chain O

30S ribosomal protein S15