IL_9WNQ_054

3D structure

PDB id

9WNQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9WNQ_054 not in the Motif Atlas

Homologous match to IL_6CZR_164

Geometric discrepancy: 0.1922

The information below is about IL_6CZR_164

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9WNQ|1|A|C|1303
9WNQ|1|A|G|1304
9WNQ|1|A|G|1305
9WNQ|1|A|A|1306
9WNQ|1|A|U|1307
9WNQ|1|A|U|1308
*
9WNQ|1|A|A|1329
9WNQ|1|A|U|1330
9WNQ|1|A|G|1331
9WNQ|1|A|A|1332
9WNQ|1|A|A|1333
9WNQ|1|A|G|1334

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain M

30S ribosomal protein S13