IL_9WNQ_076

3D structure

PDB id

9WNQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

CCAGUAG*CGAACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9WNQ_076 not in the Motif Atlas

Geometric match to IL_8B0X_071

Geometric discrepancy: 0.0625

The information below is about IL_8B0X_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_02666.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

9WNQ|1|b|C|239
9WNQ|1|b|C|240
9WNQ|1|b|A|241
9WNQ|1|b|G|242
9WNQ|1|b|U|243
9WNQ|1|b|A|244
9WNQ|1|b|G|245
*
9WNQ|1|b|C|253
9WNQ|1|b|G|254
9WNQ|1|b|A|255
9WNQ|1|b|A|256
9WNQ|1|b|C|257
9WNQ|1|b|G|258

Current chains

Chain b

23S ribosomal RNA

Nearby chains

Chain 7

Large ribosomal subunit protein bL35

Chain m

50S ribosomal protein L15